Ting-Ying Wu*, Ya-Ru Li, Kai-Jyun Chang, Jhen-Cheng Fang, Daisuke Urano and (Ming-Jung Liu*) (2024) Modeling alternative translation initiation sites in plants reveals evolutionarily conserved cis-regulatory codes in eukaryotes. Genome Research,
(Ming-Jung Liu*), Jhen-Cheng Fang, Ya Ma, Geeng-Loo Chong, Chun-Kai Huang, Ami Takeuchi, Natsu Takayanagi, Misato Ohtani* (2024) Frontiers in Plant RNA Research in ICAR2023: from Lab to Innovative Agriculture. Plant Molecular Biology,
Arenas-Alfonseca Lucía, Yamada Masashi, Romero Luis C., García Irene (2023) New Insights on the Role of ß-Cyanoalanine Synthase CAS-C1 in Root Hair Elongation through Single-Cell Proteomics. Plants, 12(23), 4055
Jhen-Cheng Fang and (Ming-Jung Liu*) (2023) Translation initiation at AUG and non-AUG triplets in plants. PLANT SCIENCE,
Suarez Angelica Faith L., Juanillo Angel Ann B., Sison Dave Clark D., Orajay Joey I., Javier Maria Bella B., Baladjay Diane Monique S., (Yang Yu-Liang), Saludes Jonel P., Dalisay Doralyn S. (2023) In situ spatiotemporal mapping of 3-hydroxy-3-methylglutaryl-CoA reductase (HMGCR) inhibitor in pineapple (Ananas comosus) fruit tissue by MALDI mass spectrometry imaging. Frontiers in Natural Products, 2, 1160541
Negi Juntaro, Obata Tomoki, Nishimura Sakura, Song Boseok, Yamagaki Sho, Ono Yuhei, Okabe Makoto, Hoshino Natsumi, Fukatsu Kohei, Tabata Ryo, Yamaguchi Katsushi, Shigenobu Shuji, Yamada Masashi, Hasebe Mitsuyasu, Sawa Shinichiro, Kinoshita Toshinori, Nishida Ikuo, Iba Koh (2023) PECT1 , a rate‐limiting enzyme in phosphatidylethanolamine biosynthesis, is involved in the regulation of stomatal movement in Arabidopsis. The Plant Journal, 1, 1-12
Cai, Y.S. Cai, J.L., Lee, J.T., Li, Y.M., Freta Kirana Balladona, F.K., Sukma, D., and Chan, M.T.* (2023) Arabidopsis AtMSRB5 functions as a salt-stress protector for both Arabidopsis and rice. Frontiers in Plant Science, 14, 1072173
Bayubaskara, M.F., Ohme-Takagi, M., and Chan, M.T. (2023) Optimal culture conditions of Piriformospora indica for volatile compound release to promote effective plant growth. PLANT BIOTECHNOLOGY, 40, 117-121
Jang Yeong‐Jiunn*, Chen Guan‐Yu, Jhan Yun‐Lian, Lo Pei‐Ting, Hsu Wei‐Yu, Wang Ke, Hsu Ya‐Ting, Lee Chia‐Lin, (Yang Yu‐Liang), Wu Yang‐Chang* (2023) Chemo‐ and Regioselective Construction of Functionalized Isocoumarin, Flavone, and Isoquinolinedione via a One‐pot Reaction of o ‐Quinol Acetate and Soft Nucleophiles. ADVANCED SYNTHESIS & CATALYSIS,
Sotta Naoyuki, Sakamoto Takuya, Kamiya Takehiro, Tabata Ryo, Yamaguchi Katsushi, Shigenobu Shuji, Yamada Masashi, Hasebe Mitsuyasu, Sawa Shinichiro, Fujiwara Toru (2023) NAC103 mutation alleviates DNA damage in an Arabidopsis thaliana mutant sensitive to excess boron. Frontiers in Plant Science, 14, 21-23
W. T. Sun, S. C. Cheng, Y. T. Chao, S. Y.Lin, T. T. Yang, Y. P.Ho, M. C. Shih, Ko, S. S.* (2023) Sugars and sucrose transporters in pollinia of Phalaenopsis aphrodite (Orchidaceae). J Exp Bot, 74(8), 2556-2571
Sun, W.-T.†; Cheng, S.-C.†; Chao, Y.-T.†; Lin, S.-Y.; Yang, T.-T.; Ho, Y.-P.; Shih, M.-C.*; Ko, S.-S.* (2023) Sugars and sucrose transporters in pollinia of Phalaenopsis aphrodite (Orchidaceae). J. Exp. Bot., 74, 2556-2571 †Equal contribution
Toopaang W, Panyawicha K, Srisuksam C, Hsu WC, Lin CC, Tanticharoen M, (Yang YL)*, Amnuaykanjanasin A* (2023) Metabolomic Analysis Demonstrates the Impacts of Polyketide Synthases PKS14 and PKS15 on the Production of Beauvericins, Bassianolide, Enniatin A, and Ferricrocin in Entomopathogen Beauveria bassiana.. Metabolites, 13(3), 425
Tran Nguyen Minh H, Kuo TF, Lin WY, Peng TC, Yang G, Lin CY, Chang TH, (Yang YL), Ho CH, Ou BR, Yang CW*, Liang YC*, Yang WC (2023) A Novel Phytogenic Formulation, EUBIO-BPSG, as a Promising One Health Approach to Replace Antibiotics and Promote Reproduction Performance in Laying Hens.. Bioengineering (Basel, Switzerland), 10(3), 346
Sun, W. T., Cheng, S. C.,Chao, Y. T.,Lin, S. Y.,Yang, T. T.,Ho, Y. P.,Shih, M. C.,Ko, S. S.* (2023) Sugars and Sucrose Transporters in Pollinia of Phalaenopsis aphrodite (Orchidaceae). Journal of Experimental Botany, 74, 2556-2571.
Huang Chien-Jui, Wu Ting-Li, Zheng Po-Xing, Ou Jheng-Yang, Ting Chao-Ling, Lin Yao-Cheng* (2022) Complete Genome Sequence Resource of Pectobacterium colocasium strain F1-1 that Causes Soft Rot Disease of Taro. Plant Disease,
Bo-Lin Ho, Jhun-Chen Chen, Tzu-Pi Huang*, Su-Chiung Fang* (2022) Protocorm-like-body extract of Phalaenopsis aphrodite combats watermelon fruit blotch disease. Frontiers in Plant Science, 13:1054586. doi: 10.3389/fpls.2022.1054586
Ochatt, S.J., Beruto, M.I., Chan, M.T., Prestwich, B.M.D., Eimert, K., Maurizio Lambardi, M., and Winkelmann, T. (2022) Biotechnology of ornamental plants: when beauty joins science—preface from the editors.. Plant Tissue and Organ Culture, 149, 497-502
Yang, C.L., Huang, Y.T., Schmidt, W., Klein, P., Chan, M.T. and Pan, I. (2022) Ethylene Response Factor109 Attunes Immunity, Photosynthesis, and Iron Homeostasis in Arabidopsis Leaves.. Frontiers in Plant Science, 13, 492
Su-Chiung Fang*, Jhun-Chen Chen, Pou-Yi Chang, Hsiang-Yin Lin (2022) Co-option of the SHOOT MERISTEMLESS network regulates protocorm-like-body development in Phalaenopsis aphrodite. Plant Physiology, 190 (1): 127-145. doi.org/10.1093/plphys/kiac100
Chen C-C, Li M-S, Chen K-T, Lin Y-H, Ko S-S* (2022) Photosynthetic and Morphological Responses of Sacha Inchi (Plukenetia volubilis L.) to Waterlogging Stress. Plants, 11(3), 249
Cheng, S.-C.*; Lin, H.-J.; Lee, C.-Y.; Huang, M.-Z.; Shiea, J.* (2022) Gas chromatography combined with flame-induced atmospheric pressure chemical ionization mass spectrometry for the analysis of fatty acid methyl esters and saturated hydrocarbons. Anal. Chim, 1200, 339611
Shiea, J.*; Lin, H.-J.; Bhat, S. M.; Lee, C.-Y.; Huang, M.-Z.; Ponnusamy, V. K.; Cheng, S.-C.* (2022) Thin layer chromatography/desorption flame-induced atmospheric pressure chemical ionization/mass spectrometry for the analysis of volatile and semi-volatile mixtures. Rapid Commun. Mass Spectrom, 36, e9409
Hu Hao-Chun, Yu Szu-Yin, Hung Xiao-Shan, Su Chun-Han, (Yang Yu-Liang), Wei Chien-Kei, Cheng Yuan-Bin, Wu Yang-Chang, Yen Chia-Hung, Hwang Tsong-Long, Chen Shu-Li, Szatmári István, Hunyadi Attila, Tsai Yi-Hong, Chang Fang-Rong* (2022) Composition decipherment of Ficus pumila var. awkeotsang and its potential on COVID-19 symptom amelioration and in silico prediction of SARS-CoV-2 interference.. Journal of Food and Drug Analysis, 30(3), 440-453
Su Chun-Han, Cheng Yu-Chieh, Lai Kuei-Hung, Chang Yu-Chia, Sun Chi-Hui, Tu Po-Wen, Lin Ching-Chih, Hwang Tsong-Long, (Yang Yu-Liang*) (2022) Exploring the relationship between metabolite composition and the cold/hot properties ascribed in traditional Chinese medicine by mass spectral molecular networking–a pilot study. Journal of Food and Drug Analysis, 30(3), 402-416
Toopaang W, Bunnak W, Srisuksam C, Wattananukit W, Tanticharoen M, (Yang YL*), Amnuaykanjanasin A* (2022) Microbial polyketides and their roles in insect virulence: from genomics to biological functions.. Natural product reports, 39(11), 2008-2029
Su CH, Wang BW, Dutkiewicz EP, Hsu CC, (Yang YL*) (2022) Surface-Assisted Laser Desorption/Ionization Imaging Mass Spectrometry (SALDI-IMS)-Based Detection of Vinca Alkaloids Distribution in the Petal of Madagascar Periwinkle.. Methods in molecular biology (Clifton, N.J.), 2505, 45-58
Feng RY, Chen YH, Lin C, Tsai CH, (Yang YL), Chen YL* (2022) Surfactin secreted by Bacillus amyloliquefaciens Ba01 is required to combat Streptomyces scabies causing potato common scab.. Frontiers in plant science, 13, 998707
Li YH, Chang ZT, Yen MR, Huang YF, Chen TH, Chang JC, Wu MC, (Yang YL), Chen YW, Nai YS* (2022) Transcriptome of Nosema ceranae and Upregulated Microsporidia Genes during Its Infection of Western Honey Bee (Apis mellifera).. Insects, 13(8), 716
Su CH, Cheng YC, Chang YC, Kung TH, Chen YL, Lai KH, Hsieh HL, Chen CY, Hwang TL, (Yang YL*) (2022) Untargeted LC-MS/MS-Based Multi-Informative Molecular Networking for Targeting the Antiproliferative Ingredients in Tetradium ruticarpum Fruit.. MOLECULES, 27(14), 4462
Barchenger Derek W., Hsu Yu-ming, Ou Jheng-yang, Lin Ya-ping, (Lin Yao-cheng), Balendres Mark Angelo O., Hsu Yun-che, Schafleitner Roland, Hanson Peter (2022) Whole genome resequencing and complementation tests reveal candidate loci contributing to bacterial wilt (Ralstonia sp.) resistance in tomato. Scientific Reports, 12(1), 8374
Tu Yi-Lin, Lin Wei-Yang, (Lin Yao-Cheng) (2022) Toward automatic plant phenotyping: starting from leaf counting. Multimedia Tools and Applications, 81(9), 11865-11879
Lin Choun-Sea, Hsu Chen-Tran, Yuan Yu-Hsuan, Zheng Po-Xing, Wu Fu-Hui, Cheng Qiao-Wei, Wu Yu-Lin, Wu Ting-Li, Lin Steven, Yue Jin-Jun, Cheng Ying-Huey, Lin Shu-I, Shih Ming-Che, Sheen Jen, (Lin Yao-Cheng)* (2022) DNA-free CRISPR-Cas9 gene editing of wild tetraploid tomato Solanum peruvianum using protoplast regeneration. Plant Physiology, 188(4), 1917-1930
Yang C, Han N, Inoue C, (Yang YL), Nojiri H, Ho YN, Chien MF* (2022) Rhizospheric plant-microbe synergistic interactions achieve efficient arsenic phytoextraction by Pteris vittata.. Journal of hazardous materials, 434, 128870
Lin CC, Hoo SY, Ma LT, Lin C, Huang KF, Ho YN, Sun CH, Lee HJ, Chen PY, Shu LJ, Wang BW, Hsu WC, Ko TP, (Yang YL)* (2022) Integrated omics approach to unveil antifungal bacterial polyynes as acetyl-CoA acetyltransferase inhibitors.. Communications biology, 5(1), 454
Tu PW, Chiu JS, Lin C, Chien CC, Hsieh FC, Shih MC, (Yang YL)* (2022) Evaluation of the Antifungal Activities of Photorhabdus akhurstii and Its Secondary Metabolites against Phytopathogenic Colletotrichum gloeosporioides.. Journal of fungi (Basel, Switzerland), 8(4), 403
Choun-Sea Lin, Chen-Tran Hsu, Yu-Hsuan Yuan, Po-Xing Zheng, Fu-Hui Wu, Qiao-Wei Cheng, Yu-Lin Wu, Ting-Li Wu, Steven Lin, Jin-Jun Yue, Ying-Huey Cheng, Shu-I Lin, Ming-Che Shih, Jen Sheen, Yao-Cheng Lin* (2022) DNA-free CRISPR-Cas9 gene editing of wild tetraploid tomato Solanum peruvianum using protoplast regeneration. Plant Physiology, 188(4): 1917–1930 DOI |
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Ching-Wen Chiu, Ya-Ru Li, Cheng-Yuan Lin, Hsin-Hung Yeh and Ming-Jung Liu* (2022) Translation initiation landscape profiling reveals hidden open reading frames required for the pathogenesis of tomato yellow leaf curl Thailand virus. Plant Cell,
Sanjaya, I.P.W., Sudarsono, Chan, M.T., and Sukma, D. (2021) Relationship of resistance-related enzyme activities and salicylic acid contents in Phalaenopsis species with different levels of resistance to Dickeya dadantii.. Journal of Horticulture Research, 29, 31-34
Sukma, D., Elina, J., Raynalta, E., Aisyahi, S., Aziz, S.A., Sudarsono, and Chan, M.T. (2021) Analysis of genetic diversity in Phalaenopsis orchids with single nucleotide polymorphisms and SNAP markers derived from the Pto Gene.. SABRAO Journal of Breeding & Genetics, 53, 620-632
Chen M, Lin JY, Wu X, Apuya NR, Henry KF, Le B, Bui AQ, Pelletier JM, Cokus S, Pellegrini M, Harada JJ, Goldberg RB* (2021) Comparative analysis of embryo proper and suspensor transcriptomes in plant embryos with different morphologies. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(6), e2024704118
Shan-Li Wang, Hye Ryun An, Chii-Gong Tong & Seonghoe Jang* (2021) Flowering and flowering genes: from model plants to orchids. Horticulture, Environment, and Biotechnology, 62, 135-148
Tsai SH, Chen YT, Yang YL, Lee BY, Huang CJ, Chen CY (2021) The potential biocontrol agent Paenibacillus polymyxa TP3 produces fusaricidin-type compounds involved in the antagonism against gray mold pathogen Botrytis cinerea. Phytopathology,
Liu TY, Chen CH, Yang YL, Tsai IJ, Ho YN, Chung CL (2021) The brown root rot fungus Phellinus noxius affects microbial communities in different root-associated niches of Ficus trees. Environmental microbiology,
Hsu Chen-Tran, Yuan Yu-Hsuan, Lin Yao-Cheng, Lin Steven, Cheng Qiao-Wei, Wu Fu-Hui, Sheen Jen, Shih Ming-Che, Lin Choun-Sea (2021) Efficient and Economical Targeted Insertion in Plant Genomes via Protoplast Regeneration. The CRISPR Journal, 4(5), 752-760 DOI
Holmes EC, Chen Y-C, Mudgett MB, Sattely ES (2021) Arabidopsis UGT76B1 glycosylates N-hydroxy-pipecolic acid and inactivates systemic acquired resistance in tomato. Plant Cell, 2021 Jan 13, koaa052
Dutkiewicz EP, Su CH, Lee HJ, Hsu CC* and Yang YL* (2021) Visualizing Vinca Alkaloids in the Petal of Catharanthus roseus Using Functionalized Titanium Oxide Nanowire Substrate for Surface-assisted Laser Desorption/ionization Imaging Mass Spectrometry. Plant J, 105, 1123-1133
Hsiao Yu-Chun, Yamada Masashi (2021) The Roles of Peptide Hormones and Their Receptors during Plant Root Development. Genes, 12(1), 22
Lin YC, Chen YJ, Chen SR, Lien WJ, Chang HW, Yang YL, Liaw CC, Su JH, Chen CY, Cheng YB* (2021) Targeted Isolation of Xenicane Diterpenoids from Taiwanese Soft Coral Asterospicularia laurae. Marine Drugs, 19(3), 123
Ho YN, Hoo SY, Wang BW, Hsieh CT, Lin CC, Sun CH, Peng CC, Lin C, Yang YL* (2021) Specific Inactivation of an Anti-fungal Bacterial Siderophore by a Fungal Plant Pathogen. ISME J., 15, 1858-1861
MH Hsieh, G Hsiao, CH Chang, YL Yang, YM Ju, YH Kuo, TH, Lee* (2021) Polyketides with Anti-neuroinflammatory Activity from Theissenia cinerea. Journal of Natural Products, 84(7), 1898-1903
Khan MAR, Wang BW, Chen YY, Lin TH, Lin HC, Yang YL, Pang KL, Liaw CC* (2021) Natural polyketide 6-pentyl-2H-pyrone-2-one and its synthetic analogues efficiently prevent marine biofouling. Biofouling, 37(3), 257-266
Lin CJ, Chang YL, Yang YL, Chen YL* (2021) Natural alkaloid tryptanthrin exhibits novel anticryptococcal activity. Medical Mycology, 59(6), 545-556
Ho ST, Ho YN, Lin C, Hsu WC, Lee HJ, Peng CC, Cheng HT, Yang YL* (2021) Integrated Omics Strategy Reveals Cyclic Lipopeptides Empedopeptins from Massilia sp YMA4 and Their Biosynthetic Pathway. Marine Drugs, 19(4), 209
Ting-Ying Wu, HonZhen Goh, Christina B. Azodi, Shalini Krishnamoorthi, Ming-Jung Liu, and Daisuke Urano (2021) Evolutionarily conserved hierarchical gene regulatory networks for plant salt stress response. Nature Plants, 7, 787–799
Swee-Suak Ko, Min-Jeng Li, Yi-Cheng Ho, Chun-Ping Yu, Ting-Ting Yang, Yi-Jyun Lin, Hung-Chien Hsing, Tien-Kuan Chen, Chung-Min Jhong, Wen-Hsiung Li, and Maurice Sun-Ben Ku (2021) Rice transcription factor GAMYB modulates bHLH142 and is homeostatically regulated by TDR during anther tapetal and pollen development. Journal of Experimental Botany, 72(13), 4888-4903
Chien-Jui Huang*, Ting-Li Wu, Po-Xing Zheng, Jheng-Yang Ou, Hui-Fang Ni and Yao-Cheng Lin* (2021) Comparative Genomic Analysis Uncovered Evolution of Pathogenicity Factors, Horizontal Gene Transfer Events, and Heavy Metal Resistance Traits in Citrus Canker Bacterium Xanthomonas citri subsp citri. Frontiers in Microbiology, 12, 2605 DOI
Yen-Ling Lin, Chin-Lin Chung, Pin-jui Huang, Chun-Han Chen, Su-Chiung Fang* (2020) Revised annotation and extended characterizations of components of the Chlamydomonas reinhardtii SUMOylation system. PLANT DIRECT, 4(9): e00266. 10.1002/pld3.266
Sanjaya, I.P.W., Sukma, D., Sudarsono, and Chan. M.-T. (2020) Effect of genotype, concentration and timing of salicylic acid application to Phalaenopsis against Dickeya dadantii infection.. Biodiversitas Journal of Biological Diversity, 21, 4317-4324
Tsai, H.J., Shao, K.H., MT Chan, M.T. Cheng, C.P., Yeh, K.W., Oelmüller, R., and Wang, S.J.* (2020) Piriformospora indica symbiosis improves water stress tolerance of rice through regulating stomata behavior and ROS scavenging systems.. Plant Signaling & Behavior, 15, 1722447
Cheng, S.-C.; Lee, R.-H.; Jeng, J.-Y.; Lee, C.-W.; Shiea, J.* (2020) Fast screening of trace multiresidue pesticides on fruit and vegetable surfaces using ambient ionization tandem mass spectrometry. Anal. Chim. Acta, 1102, 63-71
Yamada M, Han X, and Benfey PN (2020) RGF1 controls root meristem size through ROS signalling. Nature, 2020 Jan;577(7788), 85-88
Chen WJ, Kuo TY, Chen CY, Hsieh FC, Yang YL, Liu JR, Shih MC* (2020) Whole Genome Sequencing and Tn5-Insertion Mutagenesis of Pseudomonas taiwanensis CMS to Probe Its Antagonistic Activity Against Rice Bacterial Blight Disease. International Journal of Molecular Sciences, 21(22), 8639
Ko Swee-Suak, Jhong Chung-Min, Lin Yi-Jyun, Wei Ching-Yu, Lee Ju-Yin, Shih Ming-Che (2020) Blue Light Mediates Chloroplast Avoidance and Enhances Photoprotection of Vanilla Orchid. International Journal of Molecular Sciences, 21(21), 8022
Yang SY, Lu WC, Ko SS, Sun CM, Hung JC, Chiou TJ* (2020) Upstream Open Reading Frame and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction. Plant Physiology, 182(1),393-407
Yamada Masashi, Han Xinwei, Benfey Philip N. (2020) RGF1 controls root meristem size through ROS signalling. Nature, 577(7788), 85-88
Kailasam S., Singh S., Liu M.-J., Lin C.-C. and Yeh K.-C.* (2020) A HemK class glutamine-methyltransferase is involved in the termination of translation and essential for iron homeostasis in Arabidopsis. New Phytologist, 226, 1361–1374
Li Y.-R. and Liu M.-J.* (2020) Prevalence of alternative AUG and non-AUG translation initiators and their regulatory effects across plants. Genome Research, 30(10), 1418-1433
Ko S-S, Jhong C-M, Shih M-C (2020) Blue Light Acclimation Reduces the Photoinhibition of Phalaenopsis aphrodite (Moth Orchid). International Journal of Molecular Sciences, 21(17), 6167
